--- Start extending annotations ---
combing spliced feature tibble objects across all samples in 426.6 mins.
Error in reducer$value.cache[[as.character(idx)]] <- values : 
  wrong args for environment subassignment
Calls: bambu ... .bploop_impl -> .collect_result -> .reducer_add -> .reducer_add
In addition: Warning message:
In parallel::mccollect(wait = FALSE, timeout = 1) :
  1 parallel job did not deliver a result
Execution halted
Error while shutting down parallel: unable to terminate some child processes

transcript_assembly.R \
    --rds=293ff57d4d_293ff57d4d.rds,297179d67_297179d67.rds,2927c8cacf_2927c8cacf.rds,2914aed833_2914aed833.rds,2871ce02c3_2871ce02c3.rds,289d1e19e_289d1e19e.rds,296d362f7f_296d362f7f.rds,296f1c9f05_296f1c9f05.rds,275aaa128d_275aaa128d.rds,275685f9f_275685f9f.rds,2979420730_2979420730.rds,2858272176_2858272176.rds,2910b07682_2910b07682.rds,29511fd2a3_29511fd2a3.rds,29595986fb_29595986fb.rds,272f08febe_272f08febe.rds,295e79b274_295e79b274.rds,27691ac39b_27691ac39b.rds,296163a6ef_296163a6ef.rds,281295d9ba_281295d9ba.rds,2918fa4deb_2918fa4deb.rds,28dc5c7af_28dc5c7af.rds,2853522b9a_2853522b9a.rds,2822ae15eb_2822ae15eb.rds,2874e97aba_2874e97aba.rds,291c4e96_291c4e96.rds,295fc4a06f_295fc4a06f.rds,295b0f9002_295b0f9002.rds,2957deb126_2957deb126.rds,2830bcb18e_2830bcb18e.rds,291f60f666_291f60f666.rds,2917ce0264_2917ce0264.rds,275066ff9c_275066ff9c.rds,2946da569b_2946da569b.rds,29b18c084_29b18c084.rds,29203af3ae_29203af3ae.rds,292ac13256_292ac13256.rds,296113ce54_296113ce54.rds,291a434017_291a434017.rds,293225cf7d_293225cf7d.rds,299d9091e_299d9091e.rds,2910bcd898_2910bcd898.rds,293bd94d4b_293bd94d4b.rds,2977841148_2977841148.rds,2929a50622_2929a50622.rds,292361bb72_292361bb72.rds,283a3712f8_283a3712f8.rds,2936a2ac0f_2936a2ac0f.rds,2932f79e5d_2932f79e5d.rds,295ce15443_295ce15443.rds,292d39a61c_292d39a61c.rds,2979aa1901_2979aa1901.rds,282b092165_282b092165.rds,29383c858b_29383c858b.rds,297476bbed_297476bbed.rds,271a67b5a5_271a67b5a5.rds,295cdcf8bb_295cdcf8bb.rds,282ec9a2d5_282ec9a2d5.rds,28cc0cd48_28cc0cd48.rds,2d6a339476_2d6a339476.rds,2955510ecc_2955510ecc.rds,2948427518_2948427518.rds,29bbbf521_29bbbf521.rds,2863597caa_2863597caa.rds,28ea93ef0_28ea93ef0.rds,2916427bd3_2916427bd3.rds,2979c4b878_2979c4b878.rds,2835a78ab0_2835a78ab0.rds,29adccd8e_29adccd8e.rds,29730b56fd_29730b56fd.rds,2929d7119e_2929d7119e.rds,2976466bee_2976466bee.rds,28561c132f_28561c132f.rds,29234b4c7c_29234b4c7c.rds,275df19334_275df19334.rds,2934f262c8_2934f262c8.rds,293b2ab9b8_293b2ab9b8.rds,297a87e8f1_297a87e8f1.rds,292b53d83b_292b53d83b.rds,294cfe0ee4_294cfe0ee4.rds,298ec2169_298ec2169.rds,2928f2a5a9_2928f2a5a9.rds,296ba13665_296ba13665.rds,284c302704_284c302704.rds,2973b6fb76_2973b6fb76.rds,29182e59dd_29182e59dd.rds,296ec55b7f_296ec55b7f.rds,295cfd1097_295cfd1097.rds,295946be1e_295946be1e.rds,296c95f0bd_296c95f0bd.rds,274cdb35ee_274cdb35ee.rds,29726ae120_29726ae120.rds,297b3af8ce_297b3af8ce.rds,2933b5e152_2933b5e152.rds,297e430703_297e430703.rds \
    --yieldsize=NULL \
    --ref_genome=GRCh38.primary_assembly.genome.fa \
    --ref_gtf=gencode.v45.primary_assembly.annotation.gtf \
    --ncore=20 \
     \
    --quant=FALSE --lowMemory=FALSE 2>&1 | tee bambu_assembly.log