Greetings,

I was wondering is it possible to extract kmers that are in bubbles? I see the bubbles command generates only the variable bases, not fixed width kmers. In otherwords, I want all kmers that, lead into and out of a bubble, for both paths. I should mention this is a diploid.

I was also wondering about the view command. I couldn't find documentation about the format. I'm guessing it's kmer,count,???

GAGCTGCCAACAGCAGAGGTAAA 24 a....C..
AAATCACCGTGAAAATATAATTC 35 a......T
ATCATTATGTATTTAATTACACA 22 ...t...T