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HKUCS Bioinformatics Algorithms and Core Technology Research Laboratory

Research group led by Ruibang Luo in Computer Science, The University of Hong Kong

57 followers
Hong Kong
http://www.bio8.cs.hku.hk/
@aquaskyline
rbluo@cs.hku.hk

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Clair3 Clair3 Public

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Python 282 32
ClairS ClairS Public

ClairS - a deep-learning method for long-read somatic small variant calling

Python 85 8
ClairS-TO ClairS-TO Public

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

Python 62 4

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Showing 10 of 32 repositories

AutoPM3 Public

HKU-BAL/AutoPM3’s past year of commit activity

Python 4 MIT 0 0 0 Updated Jun 10, 2025
ClairS Public
ClairS - a deep-learning method for long-read somatic small variant calling

HKU-BAL/ClairS’s past year of commit activity

Python 85 BSD-3-Clause 8 4 0 Updated Jun 3, 2025
Clair3 Public
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

HKU-BAL/Clair3’s past year of commit activity

Python 282 32 13 0 Updated May 23, 2025
Clair3-RNA Public
Clair3-RNA - a long-read small variant caller for RNA sequencing data

HKU-BAL/Clair3-RNA’s past year of commit activity

Python 23 BSD-3-Clause 2 5 0 Updated Apr 8, 2025
ClairS-TO Public
ClairS-TO - a deep-learning method for tumor-only somatic variant calling

HKU-BAL/ClairS-TO’s past year of commit activity

Python 62 BSD-3-Clause 4 2 0 Updated Mar 25, 2025
ClusterV Public
ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data

HKU-BAL/ClusterV’s past year of commit activity

Python 12 BSD-3-Clause 0 1 0 Updated Jan 7, 2025
TC-RENO Public
A tool to detect full length isoforms of RNA

HKU-BAL/TC-RENO’s past year of commit activity

Python 3 3 0 0 Updated Dec 14, 2024
Clair3-Nova Public
de novo variant calling in trio using Nanopore long-reads

HKU-BAL/Clair3-Nova’s past year of commit activity

Python 10 BSD-3-Clause 0 2 0 Updated Nov 1, 2024
msdb-flask Public
Mirtronstructdb: A comprehensive database of mirtrons with predicted secondary structures

HKU-BAL/msdb-flask’s past year of commit activity

HTML 1 MIT 0 0 0 Updated Jul 28, 2024
Governome Public
Governome - Towards a new standard in genomic data privacy: a realization of owner-governance

HKU-BAL/Governome’s past year of commit activity

Go 3 BSD-3-Clause 0 0 0 Updated Jul 21, 2024

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