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Error installing -r requirements.txt #41

@josh-oloro

Description

@josh-oloro

Hi there. I am trying to install and use the ALMA Toolbox for the first time. However there is a problem when installing the requirements. Below is the error code.

My operating system is macOS 12.5.1 and I am operating in Python 3.10 virtual environment. I have NumPy Version: 1.26.3.

Thanks for the help and looking forward to using the ALMA Toolbox.

Collecting numpy<=1.19,>=1.18.2 (from -r requirements.txt (line 3))
  Using cached numpy-1.19.0.zip (7.3 MB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... error
  error: subprocess-exited-with-error
  
  × Preparing metadata (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [54 lines of output]
      Running from numpy source directory.
      <string>:460: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates
      /private/var/folders/hg/mt9c8y8x289f12jsw8tz1q_40000gn/T/pip-install-gsf6za_8/numpy_1e9ba349238c43bc891e42abd0323d0b/tools/cythonize.py:73: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
        required_version = LooseVersion('0.29.14')
      /private/var/folders/hg/mt9c8y8x289f12jsw8tz1q_40000gn/T/pip-install-gsf6za_8/numpy_1e9ba349238c43bc891e42abd0323d0b/tools/cythonize.py:75: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
        if LooseVersion(cython_version) < required_version:
      
      Error compiling Cython file:
      ------------------------------------------------------------
      ...
                  self.rng_state.ctr.v[i] = counter[i]
      
              self._reset_state_variables()
      
              self._bitgen.state = <void *>&self.rng_state
              self._bitgen.next_uint64 = &philox_uint64
                                         ^
      ------------------------------------------------------------
      
      _philox.pyx:195:35: Cannot assign type 'uint64_t (*)(void *) except? -1 nogil' to 'uint64_t (*)(void *) noexcept nogil'. Exception values are incompatible. Suggest adding 'noexcept' to the type of the value being assigned.
      Processing numpy/random/_bounded_integers.pxd.in
      Processing numpy/random/_philox.pyx
      Traceback (most recent call last):
        File "/private/var/folders/hg/mt9c8y8x289f12jsw8tz1q_40000gn/T/pip-install-gsf6za_8/numpy_1e9ba349238c43bc891e42abd0323d0b/tools/cythonize.py", line 235, in <module>
          main()
        File "/private/var/folders/hg/mt9c8y8x289f12jsw8tz1q_40000gn/T/pip-install-gsf6za_8/numpy_1e9ba349238c43bc891e42abd0323d0b/tools/cythonize.py", line 231, in main
          find_process_files(root_dir)
        File "/private/var/folders/hg/mt9c8y8x289f12jsw8tz1q_40000gn/T/pip-install-gsf6za_8/numpy_1e9ba349238c43bc891e42abd0323d0b/tools/cythonize.py", line 222, in find_process_files
          process(root_dir, fromfile, tofile, function, hash_db)
        File "/private/var/folders/hg/mt9c8y8x289f12jsw8tz1q_40000gn/T/pip-install-gsf6za_8/numpy_1e9ba349238c43bc891e42abd0323d0b/tools/cythonize.py", line 188, in process
          processor_function(fromfile, tofile)
        File "/private/var/folders/hg/mt9c8y8x289f12jsw8tz1q_40000gn/T/pip-install-gsf6za_8/numpy_1e9ba349238c43bc891e42abd0323d0b/tools/cythonize.py", line 77, in process_pyx
          subprocess.check_call(
        File "/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/subprocess.py", line 369, in check_call
          raise CalledProcessError(retcode, cmd)
      subprocess.CalledProcessError: Command '['/Library/Frameworks/Python.framework/Versions/3.10/bin/python3', '-m', 'cython', '-3', '--fast-fail', '-o', '_philox.c', '_philox.pyx']' returned non-zero exit status 1.
      Cythonizing sources
      Traceback (most recent call last):
        File "/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
          main()
        File "/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
          json_out['return_val'] = hook(**hook_input['kwargs'])
        File "/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 149, in prepare_metadata_for_build_wheel
          return hook(metadata_directory, config_settings)
        File "/private/var/folders/hg/mt9c8y8x289f12jsw8tz1q_40000gn/T/pip-build-env-w3yve2iv/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 366, in prepare_metadata_for_build_wheel
          self.run_setup()
        File "/private/var/folders/hg/mt9c8y8x289f12jsw8tz1q_40000gn/T/pip-build-env-w3yve2iv/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 487, in run_setup
          super().run_setup(setup_script=setup_script)
        File "/private/var/folders/hg/mt9c8y8x289f12jsw8tz1q_40000gn/T/pip-build-env-w3yve2iv/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 311, in run_setup
          exec(code, locals())
        File "<string>", line 489, in <module>
        File "<string>", line 469, in setup_package
        File "<string>", line 274, in generate_cython
      RuntimeError: Running cythonize failed!
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed

× Encountered error while generating package metadata.

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