Recombination and recombination-dependent DNA replication in bacteriophage T4
- PMID: 9928485
- DOI: 10.1146/annurev.genet.32.1.379
Recombination and recombination-dependent DNA replication in bacteriophage T4
Abstract
General recombination is essential for growth of phage T4, because origin initiation of DNA replication is inactivated during development, and recombination-dependent initiation is necessary for continuing DNA replication. The requirement of recombination for T4 growth has apparently been a driving force to acquire and maintain multiple recombination mechanisms. This requirement makes this phage an excellent model to analyze several recombination mechanisms that appear redundant under optimal growth conditions but become essential under other conditions, or at different stages of the developmental program. The most important substrate for wild-type T4 recombination is single-stranded DNA generated by incomplete replication of natural or artificial chromosomal ends, or by nucleolytic degradation from induced breaks, or nicks. Recombination circumvents the further erosion of such ends. There are multiple proteins and multiple pathways to initiate formation of recombinants (by single-strand annealing or by strand invasion) and to convert recombinational intermediates into final recombinants ("cut and paste" or "cut and package"), or to initiate extensive DNA replication by "join-copy" or "join-cut-copy" mechanisms. Most T4 recombination is asymmetrical, favoring the initiation of replication. In wild-type T4 these pathways are integrated with physiological changes of other DNA transactions: mainly replication, transcription, and packaging. DNA replication and packaging enzymes participate in recombination, and recombination intermediates supply substrates for replication and packaging. The replicative recombination pathways are also important for transmission of intron DNA to intronless genomes ("homing"), and are implicated in horizontal transfer of foreign genes during evolution of the T-even phages. When horizontal transfer involves heteroduplex formation and repair, it is intrinsically mutagenic and contributes to generation of species barriers between phages.
Similar articles
-
Two recombination-dependent DNA replication pathways of bacteriophage T4, and their roles in mutagenesis and horizontal gene transfer.Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8306-11. doi: 10.1073/pnas.131007398. Proc Natl Acad Sci U S A. 2001. PMID: 11459968 Free PMC article.
-
On the mutagenicity of homologous recombination and double-strand break repair in bacteriophage.DNA Repair (Amst). 2011 Jan 2;10(1):16-23. doi: 10.1016/j.dnarep.2010.09.006. Epub 2010 Oct 15. DNA Repair (Amst). 2011. PMID: 20951652
-
A species barrier between bacteriophages T2 and T4: exclusion, join-copy and join-cut-copy recombination and mutagenesis in the dCTPase genes.Genetics. 1998 Apr;148(4):1461-73. doi: 10.1093/genetics/148.4.1461. Genetics. 1998. PMID: 9560366 Free PMC article.
-
Multiple initiation mechanisms adapt phage T4 DNA replication to physiological changes during T4's development.FEMS Microbiol Rev. 1995 Aug;17(1-2):83-98. doi: 10.1111/j.1574-6976.1995.tb00190.x. FEMS Microbiol Rev. 1995. PMID: 7669352 Review.
-
Recombination-dependent DNA replication in phage T4.Trends Biochem Sci. 2000 Apr;25(4):165-73. doi: 10.1016/s0968-0004(00)01559-0. Trends Biochem Sci. 2000. PMID: 10754548 Review.
Cited by
-
Mechanisms for recurrent and complex human genomic rearrangements.Curr Opin Genet Dev. 2012 Jun;22(3):211-20. doi: 10.1016/j.gde.2012.02.012. Epub 2012 Mar 20. Curr Opin Genet Dev. 2012. PMID: 22440479 Free PMC article. Review.
-
RNA binding and R-loop formation by the herpes simplex virus type-1 single-stranded DNA-binding protein (ICP8).Nucleic Acids Res. 2004 Aug 25;32(15):4576-84. doi: 10.1093/nar/gkh797. Print 2004. Nucleic Acids Res. 2004. PMID: 15329407 Free PMC article.
-
A novel nuclease-ATPase (Nar71) from archaea is part of a proposed thermophilic DNA repair system.Nucleic Acids Res. 2004 Nov 29;32(21):6176-86. doi: 10.1093/nar/gkh960. Print 2004. Nucleic Acids Res. 2004. PMID: 15570068 Free PMC article.
-
Processive and unidirectional translocation of monomeric UvsW helicase on single-stranded DNA.Biochemistry. 2009 Feb 10;48(5):1036-46. doi: 10.1021/bi801792q. Biochemistry. 2009. PMID: 19154117 Free PMC article.
-
Repair of DNA Breaks by Break-Induced Replication.Annu Rev Biochem. 2021 Jun 20;90:165-191. doi: 10.1146/annurev-biochem-081420-095551. Epub 2021 Apr 1. Annu Rev Biochem. 2021. PMID: 33792375 Free PMC article. Review.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources