The biocommons is a community that fosters collaboration on pre-competitive, interoperable, and high-quality bioinformatics open source software and data, primarily for biological sequence analysis and interpretation.
Code is released under Apache License v2 and data are released under the Creative Commons CC-BY 4.0 license.
See biocommons.org for more information.
[in development] Proof-of-Concept variation translation, validation, and registration service
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
non-redundant, compressed, journalled, file-based storage for biological sequences
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
Template for new biocommons packages, and source of configuration for periodic updates to derived packages
OpenAPI-based REST interface to biological sequences and sequence metadata
simplified searching, fetching, and parsing records from NCBI using their E-utilities interface
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