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Trying to use NVScoreVariants fails because of python package <code>scorevariants</code> not found

Status: Open.

#9190 In broadinstitute/gatk;

· famosab opened on May 28, 2025

GenotypeGVCFs - IllegalStateException: VariantContext must contain at least one genotype with likelihoods -- did this VC exceed the max number of alt alleles?

Status: Open.

#9186 In broadinstitute/gatk;

· Honeyglitch opened on May 26, 2025

Requester pays access issue in Terra workspace

Status: Open.

#9183 In broadinstitute/gatk;

· nityajain2002 opened on May 20, 2025

CombineGVCFs produces incorrectly ordered output.

Status: Open.

#9181 In broadinstitute/gatk;

· drtconway opened on May 20, 2025

CombineGvcfs &amp;GenomicsDBImport

Status: Open.

#9178 In broadinstitute/gatk;

· X7xf opened on May 19, 2025

Very low CPU usage when running GATK GenotypeGVCFs

Status: Open.

#9174 In broadinstitute/gatk;

· GooLey1025 opened on May 13, 2025

Genotype Germline Sites is Never Unit-tested

Status: Open.

#9172 In broadinstitute/gatk;

· DarioS opened on May 11, 2025

TransferReadTags is unable to delete temp files

Status: Open.

#9169 In broadinstitute/gatk;

· tobsecret opened on May 7, 2025

Funcotator - Google bucket inaccessible

Status: Open.

#9167 In broadinstitute/gatk;

· emsisson opened on May 7, 2025

PreprocessIntervals <code>--padding</code> has no effect

Status: Open.

#9165 In broadinstitute/gatk;

· lczech opened on May 5, 2025

IllegalStateException: Genotype has no likelihoods

Status: Open.

#9164 In broadinstitute/gatk;

· aarthi-mohan opened on May 2, 2025

Any function to add originial qualities to a BQSR bam?

Status: Open.

#9163 In broadinstitute/gatk;

· rajwanir opened on May 2, 2025