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Request for guidance: CIBERSORTx token access for EcoTyper Tutorials 3/4

Status: Open.

#100 In digitalcytometry/ecotyper;

· dingzetao opened on Mar 19, 2025

Handling batch effects

Status: Open.

#99 In digitalcytometry/ecotyper;

· WJRDW opened on Jan 17, 2025

Error when running ecoTyper in discovery mode on the bulk Staudt dataset

Status: Open.

#98 In digitalcytometry/ecotyper;

· ArtemisPapadaki opened on Nov 19, 2024

Help with error Ecotyper failed: Error in RunJobQueue()

Status: Open.

#97 In digitalcytometry/ecotyper;

· WJRDW opened on Jul 26, 2024

Can EcoTyper be used in murine tumor analysis?

Status: Open.

#96 In digitalcytometry/ecotyper;

· Lewisen-Liu opened on Jul 25, 2024

Question regarding data displayed as heatmap on "https://ecotyper.stanford.edu/carcinoma/"

Status: Open.

#91 In digitalcytometry/ecotyper;

· itigupta2429 opened on Apr 26, 2024

Spot-Level Immune Cell Deconvolution in Spatial RNA-seq Data

Status: Open.

#89 In digitalcytometry/ecotyper;

· sallyseullee-0821 opened on Apr 17, 2024

[Ecotyper] Error in NMF step at Tutorial1 using user-defined profile

Status: Open.

#88 In digitalcytometry/ecotyper;

· jpark27 opened on Mar 15, 2024

Tutorial 4 Discovery: I don't set Singularity but it seems tends to run on the Singularity, NOT the default Docker

Status: Open.

#84 In digitalcytometry/ecotyper;

· Sawakotx opened on Nov 28, 2023

Failure of Recovery of Ecotypes (Tutorial 3) in Spatial Transcriptomics data

Status: Open.

#80 In digitalcytometry/ecotyper;

· corecontingency opened on Oct 15, 2023