The In Silico Framework (ISF)

An In Silico Framework for multi-scale modeling and analysis of in vivo neuron-network mechanisms

Documentation is available at mpinb.github.io/in_silico_framework

Tutorials on ISF's most important workflows are available online, and under getting_started/tutorials

Installation instructions can be found here, but are also repeated below.

ISF is available for Linux, Windows and macOS. For installation and environment management, ISF uses pixi. You can install pixi on Linux and macOS by running:

curl -fsSL https://pixi.sh/latest | sh

and on Windows:

powershell -ExecutionPolicy ByPass -c "irm -useb https://pixi.sh/install.ps1 | iex"

To install ISF with pixi, simply:

git clone https://github.com/mpinb/in_silico_framework.git --depth 1 &&
cd in_silico_framework &&
pixi run setup