Skip to content

Overhaul PyDesigner Code 2 #312

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
wants to merge 81 commits into
base: master
Choose a base branch
from
Open

Conversation

TheJaeger
Copy link
Collaborator

@TheJaeger TheJaeger commented Nov 3, 2023

This PR fixes various reported bugs and updates documentation to tackle:

In addition, PyDesigner will undergo transition to Poetry for package management and pre-commit for hooks and tests. Automations will also be introduced to automatically publish, release, and document changes.

Another big change is to transition PyDesigner into a diffusion imaging library i.e. various functions of PyDesigner can be called for custom scripting.

Closes #303 #305 #306 #308

@TheJaeger TheJaeger self-assigned this Nov 3, 2023
@TheJaeger TheJaeger added bugfix Fixed for something not working documentation Improvements or additions to documentation feature New feature or request labels Nov 3, 2023
@TheJaeger TheJaeger marked this pull request as ready for review April 30, 2025 05:48
@TheJaeger
Copy link
Collaborator Author

@ryn-thorn @gonzoBlackMamba This update is ready. Please test on your end and let me know if it works fine. You need to have Poetry installed and need AT LEAST Python 3.12.

Switch to this branch and run poetry install. Then invoke pydesigner with poerty run pydesigner [OPTIONS] .... Test some data and approve/reject this pull request accordingly.

Copy link

Code Coverage

Package Line Rate Health
. 0%
fitting 41%
plotting 3%
postprocessing 0%
preprocessing 23%
system 83%
tractography 16%
Summary 25% (945 / 3786)

Minimum allowed line rate is 10%

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bugfix Fixed for something not working documentation Improvements or additions to documentation feature New feature or request
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant