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Add an iqtree module

Status: Open.

#89 In mycobactopia-org/MTBseq-nf;

· abhi18av opened on Oct 17, 2024

Update the resistance database

Status: Open.

#80 In mycobactopia-org/MTBseq-nf;

· abhi18av opened on Apr 12, 2023

Refactor the pipeline to rely upon the nf-core template

Status: Open.

#77 In mycobactopia-org/MTBseq-nf;

· abhi18av opened on Mar 31, 2023

Evaluate the use of hard-coded exit status as a fallback for mtbseq statuses

Status: Open.

#63 In mycobactopia-org/MTBseq-nf;

· abhi18av opened on Apr 22, 2022

Automatically download and extract the GATK jar

enhancementNew feature or requestNew feature or request

Status: Open.

#57 In mycobactopia-org/MTBseq-nf;

· abhi18av opened on Mar 24, 2022

[BUG] cannot create regular file ‘GenomeAnalysisTK.jar’ File exists - conda executor

bugSomething isn't workingSomething isn't working

Status: Open.

#54 In mycobactopia-org/MTBseq-nf;

· Mxrcon opened on Nov 22, 2021

Allow the users to specify their own MTB references

Status: Open.

#53 In mycobactopia-org/MTBseq-nf;

· abhi18av opened on Oct 21, 2021

Publish Logs

Status: Open.

#52 In mycobactopia-org/MTBseq-nf;

· abhi18av opened on Oct 21, 2021

Generate nextflow schema

Status: Open.

#45 In mycobactopia-org/MTBseq-nf;

· emilyncosta opened on Sep 23, 2021

Add github issue/contribution templates

good first issueGood for newcomersGood for newcomers

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#40 In mycobactopia-org/MTBseq-nf;

· abhi18av opened on Sep 9, 2021

Create a documentation website

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#35 In mycobactopia-org/MTBseq-nf;

· abhi18av opened on Sep 8, 2021