This repository contains the files that generate Andy's Brain Book on ReadTheDocs.

Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis

A novel method for sampling the active and noisy areas is proposed by using the purification of gray and non-gray matter areas of fMRI data. Also, a data-driven network is proposed in a parallel, multi-step and integrated manner for optimal noise reduction of t-fMRI data.

Code used for the stimulus and data analysis of the study "Identification of competing neural mechanisms underlying visual perceptual hysteresis: persistence vs. adaptation".

Code to analyze audio-visual-tactile high-resolution 7T data

PychoPy implementation of n-back, and facename fMRI tasks

Analyses scripts used for Algermissen, J., Swart, J. C., Scheeringa, R., Cools, R., & den Ouden, H. E. (2021). Striatal BOLD and midfrontal theta power express motivation for action. Cerebral Cortex.

code for the CPPL participation to NARPS

Code to run and analyse of audiovisual/attention 7T experiment

shell script package for (pre)processing fmri data

Analyses scripts used for Algermissen, J., Swart, J. C., Scheeringa, R., Cools, R., & den Ouden, H. E. (2024). Prefrontal signals precede striatal signals for biased credit assignment in motivational learning biases. Nature Communications.