Utility functions for working with DICOM and BIDS neuroimaging data

MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness

A Matlab-based software package for preprocessing the resting-state fMRI data

This code repository contains a collection of Python scripts for classifying autistic and control conditions using Support Vector Machines (SVM), leveraging preprocessed functional MRI (fMRI) data from the ABIDE dataset.

Optimization of Preprocessing Pipelines for NeuroImaging (OPPNI) for fMRI preprocessing

CVNR Imaging Core Issues List

This GitHub repo examines how fMRI preprocessing order (slice-timing correction vs. realignment) impacts statistical maps. We show that slice-timing correction before realignment is crucial for accurate BOLD activation and minimizing artifacts, yielding reliable contrasts in brain imaging.

Research School in Clinical Psychiatry at Karolinska Institutet

shell script package for (pre)processing fmri data

Structural and functional MRI data analysis scripts

This repository contains iPython notebooks that run on the octave kernel to accompany tutorial and slides presented at PRNI

Code for importing/preprocessing/analysing wavepain MRI and behavioural data. And plotting routines.

BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)

Repository for initial code behind OpenNFT's motion monitoring add-on (afterwards renamed to real-time quality assessment module (rtQA)).

Pipeline to analyze fMRI data with AFNI

Uses regression and factor model approach to correct for site effects in fMRI volumes