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GeneExpressionAnalysis
GeneExpressionAnalysis PublicA tutorial demonstrating how to analyze gene expression data using elastic net models to predict patient responses to immunotherapy, focusing on regularization, cross-validation, and feature import…
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CAMISIM_Preparation_Pipeline
CAMISIM_Preparation_Pipeline PublicA step-by-step guide on how to generate the required files needed for CAMISIM to run for de novo community design and read simulation. Definitely a work in progress.
Python
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FDR-Hedenfalk-Microarray
FDR-Hedenfalk-Microarray PublicReproducing key findings from Storey and Tibshirani (2003) using preprocessed microarray data to analyze differentially expressed genes (DEGs). Leveraging R and statistical packages to explore the …
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DNA-Microarray-Limma
DNA-Microarray-Limma PublicThis project involves analyzing DNA microarray data using Bioconductor and R to identify differentially expressed genes in mutant versus wild-type zebrafish. It leverages statistical techniques, in…
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RNA-Seq-Analysis
RNA-Seq-Analysis PublicThis project provides a reproducible workflow for bulk RNA-Seq data analysis, including preprocessing, quality control, differential expression analysis, and visualization using edgeR and limma-voo…
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