Personal Cancer Genome Reporter (PCGR)

Patient-Specific Modeling in Python

cBioPortal is a data visualization tool for cancer genomics. This repository contains all components to deploy the customized version of cBioPortal used in the PM4Onco use case of the Medical Informatics Initiative Germany.

preon (PREcision Oncology Normalization) is a fuzzy search tool for medical entities.

A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).

MIRACUM-Pipe is a whole exome and panel sequencing pipeline for precision oncology (https://github.com/AG-Boerries/MIRACUM-Pipe). This repository is a port of the pipeline running inside a singularity container.

Cancer prognosis with shallow tumor RNA sequencing

Spatially resolved prediction of drug sensitivity in the tumor microenvironment via deep graph contrastive and transfer learning

Pan Cancer Pan Treatment Github Repository