Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

Detect novel (and reference) STR expansions from short-read data

Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat

NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.

Computational, High-throughput Individual Identification through Microsatellite Profiling

A python package, command-line tool, and Shiny application to compare short tandem repeat (STR) profiles.

Microsatellite genotyping

🧬 A curated list of awesome resources for repeat DNA research

Allele-specific expression (ASE) for short tandem repeats (STRs)

Supporting code for the microsatellite genotyping paper introducing CHIIMP

Detection and classfication of short tandem repeats in read data

Nextflow pipeline for ultrasensitive STR analysis

🧬 recombination and mutation rates inference from polymorphisms (STRs, SNPs and INDELs) along the X chromosome