Synthetic biology (SynBio) is a multidisciplinary area of research that seeks to create new biological parts, devices, and systems, or to redesign systems that are already found in nature.
Genetic circuit design automation
A Go package for engineering organisms.
👁️ Python library to plot DNA sequence features (e.g. from Genbank files)
✏️ A versatile DNA sequence optimizer
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
BGC Detection and Classification Using Deep Learning
Open source biolab
A modern, end-to-end genetic circuit design desktop app
Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
Computational synthetic biology: Predicting DNA edits for bioengineering
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
The resources I always recommend to new synthetic biologists.
Web application enabling users and software to browse, upload, and share synthetic biology designs
⚗️ Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
Cello v2 is the continuation of the Cello genetic circuit design software.
Reinforcement Learning based bioretrosynthesis tool
🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more
💠 Find common blocks and differences between DNA sequences
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!