Open repository for EU-funded research outputs from Horizon Europe, Euratom, and earlier Framework Programmes.
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May 1, 2025 (v0.3.3)SoftwareOpen
Assemble Genome using PacBio HiFi and HiC data from the same individual for phasing. Prerequisite: Run k-mer profiling workflow (VGP1). This workflow uses HiFiasm for contigging, and generates assembly statistics, BUSCO reports, Merqury histograms, and the genome assembly contigs in fasta and GFA format.
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May 1, 2025 (v0.9.3)SoftwareOpen
Generate phased assembly based on PacBio HiFi reads and parental Illumina data for phasing. Part of the VGP workflow suite, it needs to be run after the Trio k-mer Profiling workflow VGP2. This workflow uses HiFiasm for contigging, and generates assembly statistics, BUSCO reports, Merqury plots, and the genome assembly contigs in fasta and GFA format.
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May 1, 2025 (v1.5)SoftwareOpen
This workflow performs the scaffolding of a genome assembly using HiC data with YAHS. Can be used on any assembly with Hi-C data, and the assembly in the gfa format. You can generate a gfa from a fasta using the gfastat tool. Part of the VGP set of workflows, it is meant to be run after the contigging (workflows 3,4, or 5), optional purging...
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May 1, 2025 (v0.7.6)SoftwareOpen
Purge contigs marked as duplicates by purge_dups in a single haplotype (could be haplotypic duplication or overlap duplication). If you think the purged contigs might belong to the other haplotype, use the workflow VGP6 instead. This workflow is the 6th workflow of the VGP pipeline. It is meant to be run after one of the contigging steps...
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May 1, 2025 (v0.2.9)SoftwareOpen
Generate a genome assembly based on PacBio HiFi reads. Part of the VGP suite, it needs to be run after the VGP1 k-mer profiling workflow. The assembly contigs are built using HiFiasm, and the workflow generates assembly statistics, BUSCO reports, Merqury plots, and the contigs in fasta and GFA formats.
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May 1, 2025 (v1)DatasetOpen
The dataset comprises bone marrow aspirate smear WSI for 257 pediatric cases of leukemia, including acute lymphoid leukemia (ALL), acute myeloid leukemia (AML), and chronic myeloid leukemia (CML). The smears were prepared for the initial diagnosis (i.e., without prior treatment), stained in accordance with the Pappenheim method, and scanned at...
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May 1, 2025 (v1)PresentationOpen
Lessons Learned from AI in Multiple Long-Term Conditions Research Support Facility (AIM RSF) Abstract: Conducting AI-driven research into Multiple Long-Term Conditions (MLTCs) presents significant challenges around data, capabilities and capacity, and inclusion of all the necessary stakeholders, particularly within large-scale,...
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September 17, 2023 (v1)PresentationOpen
Apresentação do artigo aceito na 14a Conferência Lusófona de Ciência Aberta ConfOA 2023 (https://confoa.rcaap.pt/2023/)
Uploaded on May 1, 2025
Part of Núcleo de Dados de Pesquisa da Rede Brasileira de Repositórios Digitais
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May 1, 2025 (v1)DatasetOpen
The dataset presented here draws on several French institutional database sources. The aim is to develop a nationwide database of food outlet locations that can be automatically enriched and updated with a high level of reliability. To this end, we created a flexible and dynamic Python script that can be widely utilized by a maximum of users....
Uploaded on May 1, 2025
Part of FEAST - Food systems that support transitions to hEalthy And Sustainable dieTs
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May 1, 2025 (v13)DatasetOpen
AntWeb is the world__s largest online database of images, specimen records, and natural history information on ants. It is community driven and open to contribution from anyone with specimen records, natural history comments, or images. Our mission is to publish for the scientific community high quality images of all the world__s ant species....
